PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5DL_46E3AC8D6.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family WRKY
Protein Properties Length: 346aa    MW: 38111.2 Da    PI: 8.117
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5DL_46E3AC8D6.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY90.71.2e-28187243259
                            --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                            +DgynWrKYGqK+ k++e prsYY+Ct   Cpvkk vers  d+ + eitY+g+H+h+
  Traes_5DL_46E3AC8D6.1 187 KDGYNWRKYGQKQLKDAESPRSYYKCTRDACPVKKIVERSF-DGCIKEITYKGRHTHP 243
                            8****************************************.***************8 PP

2WRKY45.51.6e-14313340128
                            ---SS-EEEEEEE--TT-SS-EEEEEE- CS
                   WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCt 28 
                            ldDgy+WrKYGqK+vkg++ prsYY+ t
  Traes_5DL_46E3AC8D6.1 313 LDDGYRWRKYGQKVVKGNPRPRSYYQKT 340
                            59***********************866 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.3E-25184245IPR003657WRKY domain
SuperFamilySSF1182905.36E-23185245IPR003657WRKY domain
SMARTSM007746.1E-30186244IPR003657WRKY domain
PfamPF031061.5E-21187243IPR003657WRKY domain
PROSITE profilePS5081121.184188245IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.2E-15298340IPR003657WRKY domain
SuperFamilySSF1182904.58E-12306338IPR003657WRKY domain
PROSITE profilePS5081118.372308341IPR003657WRKY domain
SMARTSM007741.3E-4313346IPR003657WRKY domain
PfamPF031066.4E-10314340IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MADRRGDAMR QQPPYSSGHQ ERVFDGGGGP AFGNDYDTAG SSYMALLGSG VNPQQSLPPQ  60
QAWGVDEVTP PTINLTPQFS MANYAPTSSY QQHQTTASFV SPLAANLHPY PSSSSSSYFQ  120
ADLPPQWPPR AMAPSPSSSL LPRNFTVHQT PAYPHHHEQQ MHMQLLRAAA LGGPHAAPAP  180
PIEQPAKDGY NWRKYGQKQL KDAESPRSYY KCTRDACPVK KIVERSFDGC IKEITYKGRH  240
THPRPPEPRR AGAEDAAAPS SAVGAHQEDE LSDDEDDGEE GHDIVSGAGG PAGQRVVRKH  300
KIILQTPSEV DLLDDGYRWR KYGQKVVKGN PRPRSYYQKT SFIWGR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-15304341845Probable WRKY transcription factor 4
2lex_A3e-15304341845Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3638030.0AK363803.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2019A07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010229481.21e-112PREDICTED: probable WRKY transcription factor 3
TrEMBLW5FSV70.0W5FSV7_WHEAT; Uncharacterized protein
STRINGBRADI1G07970.11e-111(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28753236
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07100.23e-31WRKY DNA-binding protein 26
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]